Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR3179589/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  193,861,070
 Normal Paired: 169,085,317 (87.22%)
 Chimeric Paired: 22,088,915 (11.39%)
 Chimeric Ambiguous: 2,260,981 (1.17%)
 Unmapped: 425,857 (0.22%)
 Ligation Motif Present: 52,802 (0.03%)
Alignable (Normal+Chimeric Paired): 191,174,232 (98.61%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-08-27T14:27:05,110]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 56,320,954 (29.05%)
PCR Duplicates: 134,853,278 (69.56%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 58,558,434
Intra-fragment Reads: 28,318,117 (14.61% / 50.28%)
Below MAPQ Threshold: 3,257,428 (1.68% / 5.78%)
Hi-C Contacts: 24,745,409 (12.76% / 43.94%)
 Ligation Motif Present: 17,887  (0.01% / 0.03%)
 3' Bias (Long Range): 82% - 18%
 Pair Type %(L-I-O-R): 27% - 25% - 24% - 24%
Inter-chromosomal: 4,680,994  (2.41% / 8.31%)
Intra-chromosomal: 20,064,415  (10.35% / 35.63%)
Short Range (<20Kb): 11,068,750  (5.71% / 19.65%)
Long Range (>20Kb): 8,995,652  (4.64% / 15.97%)